PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9294379g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 225aa    MW: 25200.3 Da    PI: 6.7775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9294379g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-192675255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr+++ +g+Wv+eIr+p+    r +r++lg+f+t+e+Aa+a++ a+  l+g
  MA_9294379g0010 26 TYRGVRRRE-WGKWVSEIREPK----RkTRIWLGSFDTPEMAARAYDVAAFHLKG 75
                     69****999.**********83....45**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.0122684IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-202685IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-302685IPR001471AP2/ERF domain
PfamPF008477.1E-132675IPR001471AP2/ERF domain
SMARTSM003802.9E-342690IPR001471AP2/ERF domain
PRINTSPR003671.5E-102738IPR001471AP2/ERF domain
CDDcd000185.31E-302786No hitNo description
PRINTSPR003671.5E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKRIRTQDQG AASPPRERTL KVQYPTYRGV RRREWGKWVS EIREPKRKTR IWLGSFDTPE  60
MAARAYDVAA FHLKGKKRTL LNFPELIDYL PRPISLSPRH VQAAAAEAAV AFYPKIQERG  120
SSRSPPVSNE PSSFSSSSHR LCTVINSDFE TASAEVSGQT DTGNSSSVCR PTEAVGECVA  180
VEEDLFETFN LFTNLAEALM LSPPPLCSIN EEENNLEEGF LWSGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-162788667ATERF1
3gcc_A5e-162788667ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1171012e-59FJ117101.1 Pinus taeda isolate 4346 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171032e-59FJ117103.2 Pinus taeda isolate 4361 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171042e-59FJ117104.2 Pinus taeda isolate 4349 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171052e-59FJ117105.2 Pinus taeda isolate 4355 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171062e-59FJ117106.2 Pinus taeda isolate 4347 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171072e-59FJ117107.2 Pinus taeda isolate 4348 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171082e-59FJ117108.2 Pinus taeda isolate 4359 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171122e-59FJ117112.1 Pinus taeda isolate 4345 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171132e-59FJ117113.1 Pinus taeda isolate 4356 anonymous locus UMN_6348_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ61e-106D5ABJ6_PICSI; Putative uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-35ERF family protein